The 24-year-old played his last Bundesliga match before sealing a million-pound move to Chelsea this summer.
And Werner successfully signed his career in Leipzig after opening the scoring against Augsburg to score his 94th competitive goal for the club.
The German took less than 30 minutes to make history after putting the offside of circular goalkeeper Tomas Koubek and surpassing Daniel Frahn’s record.
But Augsburg had threatened to spoil the end of Werner’s storybook after Rubén Vargas sent House a tie in the middle.
Leipzig had to tie Borussia Mochengladbach’s 2-1 lead to finish in the 3 most sensible with just one point separating the two teams.
And with ten minutes to go, Werner almost denied the chance to be the hero for the last time when he crushed Koubek for a second.
The former Stuttgart ace fell offside, but var granted the purpose and led his general to 28 league purposes for the season.
Although Werner eventually finished with Robert Lewandowski in the standings, his efforts were enough to seal Leipzig’s third place.
After speaking out on signing for Stamford Bridge, the German foreigner missed the chance to play for Julian Nagelsmann’s Champions League side in August.
they have already reached the quarter-finals after sweeping 4-0 to the Spurs in February.
But Werner’s new team, Chelsea, faces a difficult task after losing 3-0 to Bayern Munich in the first leg of the tie at Stamford Bridge.
And the striker could not appear in the Blues’ return to the Bundesliga champions despite his time at The Prem next month.
Werner’s agent recently responded to claims that his consumer disappointed his Leipzig teammates by leaving before the end of the Champions League.
Karlheinz Forster told Sport1: “What bothers me is that now Timo is cornered and portrayed as a bad sportsman, who we will take down his teammates. I don’t agree with that clearly.
“It would have been quite a start for Timo at his new club if he had returned to Leipzig after his holiday to prepare for the resumption of the Champions League.
“All stakeholders, not just Timo, say he will move to Chelsea on 1 July and not mid-August last year.”
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